UCT HPC cluster

JOB DETAILS FOR JOB 70127

captured Sun Feb 9 17:33:33 SAST 2025

MaxRAM=8.9G
MaxVMSize=0G
AveCPUFreq=93K
AveDiskRead=35230941424
AveDiskWrite=2919280623

JobId=70127 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7088 Nice=0 Account=humgen QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:17:17 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-09T17:16:16 EligibleTime=2025-02-09T17:16:16
   AccrueTime=2025-02-09T17:16:16
   StartTime=2025-02-09T17:16:16 EndTime=2025-02-10T23:16:16 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-09T17:16:16 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:1413650
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=1-10 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70127

captured Sun Feb 9 17:34:01 SAST 2025

JobId=70127 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7088 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:17:22 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-09T17:16:16 EligibleTime=2025-02-09T17:16:16
   AccrueTime=2025-02-09T17:16:16
   StartTime=2025-02-09T17:16:16 EndTime=2025-02-09T17:33:38 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-09T17:16:16 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:1413650
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=1-10 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70127

captured Sun Feb 9 17:34:32 SAST 2025

JobId=70127 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7088 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:17:22 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-09T17:16:16 EligibleTime=2025-02-09T17:16:16
   AccrueTime=2025-02-09T17:16:16
   StartTime=2025-02-09T17:16:16 EndTime=2025-02-09T17:33:38 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-09T17:16:16 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:1413650
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=1-10 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70127

captured Sun Feb 9 17:35:01 SAST 2025

JobId=70127 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7088 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:17:22 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-09T17:16:16 EligibleTime=2025-02-09T17:16:16
   AccrueTime=2025-02-09T17:16:16
   StartTime=2025-02-09T17:16:16 EndTime=2025-02-09T17:33:38 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-09T17:16:16 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:1413650
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=1-10 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70127

captured Sun Feb 9 17:35:32 SAST 2025

JobId=70127 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7088 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:17:22 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-09T17:16:16 EligibleTime=2025-02-09T17:16:16
   AccrueTime=2025-02-09T17:16:16
   StartTime=2025-02-09T17:16:16 EndTime=2025-02-09T17:33:38 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-09T17:16:16 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:1413650
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=1-10 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/cb/0f99c5b82603472f146a865bdca470/.command.log
   Power=
   TresPerTask=cpu:10