UCT HPC cluster

JOB DETAILS FOR JOB 70088

captured Sat Feb 8 21:55:02 SAST 2025

MaxRAM=9.3G
MaxVMSize=0G
AveCPUFreq=172K
AveDiskRead=34957974259
AveDiskWrite=2838048857

JobId=70088 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7091 Nice=0 Account=humgen QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:16:29 TimeLimit=5-00:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:38:33 EligibleTime=2025-02-08T21:38:33
   AccrueTime=2025-02-08T21:38:33
   StartTime=2025-02-08T21:38:33 EndTime=2025-02-13T21:38:33 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:38:33 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc231
   BatchHost=srvrochpc231
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=200G,node=1,billing=30
   AllocTRES=cpu=20,mem=200G,node=1,billing=40
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc231 CPU_IDs=0-19 Mem=204800 GRES=
   MinCPUsNode=26 MinMemoryNode=200G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70088

captured Sat Feb 8 21:55:33 SAST 2025

JobId=70088 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7091 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:16:36 TimeLimit=5-00:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:38:33 EligibleTime=2025-02-08T21:38:33
   AccrueTime=2025-02-08T21:38:33
   StartTime=2025-02-08T21:38:33 EndTime=2025-02-08T21:55:09 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:38:33 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc231
   BatchHost=srvrochpc231
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=200G,node=1,billing=30
   AllocTRES=cpu=20,mem=200G,node=1,billing=40
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc231 CPU_IDs=0-19 Mem=204800 GRES=
   MinCPUsNode=26 MinMemoryNode=200G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70088

captured Sat Feb 8 21:56:01 SAST 2025

JobId=70088 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7091 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:16:36 TimeLimit=5-00:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:38:33 EligibleTime=2025-02-08T21:38:33
   AccrueTime=2025-02-08T21:38:33
   StartTime=2025-02-08T21:38:33 EndTime=2025-02-08T21:55:09 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:38:33 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc231
   BatchHost=srvrochpc231
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=200G,node=1,billing=30
   AllocTRES=cpu=20,mem=200G,node=1,billing=40
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc231 CPU_IDs=0-19 Mem=204800 GRES=
   MinCPUsNode=26 MinMemoryNode=200G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70088

captured Sat Feb 8 21:56:33 SAST 2025

JobId=70088 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7091 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:16:36 TimeLimit=5-00:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:38:33 EligibleTime=2025-02-08T21:38:33
   AccrueTime=2025-02-08T21:38:33
   StartTime=2025-02-08T21:38:33 EndTime=2025-02-08T21:55:09 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:38:33 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc231
   BatchHost=srvrochpc231
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=200G,node=1,billing=30
   AllocTRES=cpu=20,mem=200G,node=1,billing=40
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc231 CPU_IDs=0-19 Mem=204800 GRES=
   MinCPUsNode=26 MinMemoryNode=200G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70088

captured Sat Feb 8 21:57:01 SAST 2025

JobId=70088 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7091 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:16:36 TimeLimit=5-00:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:38:33 EligibleTime=2025-02-08T21:38:33
   AccrueTime=2025-02-08T21:38:33
   StartTime=2025-02-08T21:38:33 EndTime=2025-02-08T21:55:09 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:38:33 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc231
   BatchHost=srvrochpc231
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=200G,node=1,billing=30
   AllocTRES=cpu=20,mem=200G,node=1,billing=40
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc231 CPU_IDs=0-19 Mem=204800 GRES=
   MinCPUsNode=26 MinMemoryNode=200G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/45/2de4d462701004362d09f8261160e2/.command.log
   Power=
   TresPerTask=cpu:10