UCT HPC cluster

JOB DETAILS FOR JOB 70086

captured Sat Feb 8 21:37:32 SAST 2025

MaxRAM=7.7G
MaxVMSize=0G
AveCPUFreq=181K
AveDiskRead=33404862628
AveDiskWrite=1903850553

JobId=70086 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7074 Nice=0 Account=humgen QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:16:39 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:20:53 EligibleTime=2025-02-08T21:20:53
   AccrueTime=2025-02-08T21:20:53
   StartTime=2025-02-08T21:20:53 EndTime=2025-02-12T15:20:53 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:20:53 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=150G,node=1,billing=25
   AllocTRES=cpu=20,mem=150G,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=0-19 Mem=153600 GRES=
   MinCPUsNode=20 MinMemoryNode=150G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70086

captured Sat Feb 8 21:38:02 SAST 2025

JobId=70086 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7074 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:17:05 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:20:53 EligibleTime=2025-02-08T21:20:53
   AccrueTime=2025-02-08T21:20:53
   StartTime=2025-02-08T21:20:53 EndTime=2025-02-08T21:37:58 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:20:53 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=150G,node=1,billing=25
   AllocTRES=cpu=20,mem=150G,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=0-19 Mem=153600 GRES=
   MinCPUsNode=20 MinMemoryNode=150G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70086

captured Sat Feb 8 21:38:33 SAST 2025

JobId=70086 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7074 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:17:05 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:20:53 EligibleTime=2025-02-08T21:20:53
   AccrueTime=2025-02-08T21:20:53
   StartTime=2025-02-08T21:20:53 EndTime=2025-02-08T21:37:58 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:20:53 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=150G,node=1,billing=25
   AllocTRES=cpu=20,mem=150G,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=0-19 Mem=153600 GRES=
   MinCPUsNode=20 MinMemoryNode=150G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70086

captured Sat Feb 8 21:39:01 SAST 2025

JobId=70086 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7074 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:17:05 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:20:53 EligibleTime=2025-02-08T21:20:53
   AccrueTime=2025-02-08T21:20:53
   StartTime=2025-02-08T21:20:53 EndTime=2025-02-08T21:37:58 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:20:53 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=150G,node=1,billing=25
   AllocTRES=cpu=20,mem=150G,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=0-19 Mem=153600 GRES=
   MinCPUsNode=20 MinMemoryNode=150G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70086

captured Sat Feb 8 21:39:33 SAST 2025

JobId=70086 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7074 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:17:05 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:20:53 EligibleTime=2025-02-08T21:20:53
   AccrueTime=2025-02-08T21:20:53
   StartTime=2025-02-08T21:20:53 EndTime=2025-02-08T21:37:58 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:20:53 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=150G,node=1,billing=25
   AllocTRES=cpu=20,mem=150G,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=0-19 Mem=153600 GRES=
   MinCPUsNode=20 MinMemoryNode=150G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70086

captured Sat Feb 8 21:40:01 SAST 2025

JobId=70086 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7074 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:17:05 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:20:53 EligibleTime=2025-02-08T21:20:53
   AccrueTime=2025-02-08T21:20:53
   StartTime=2025-02-08T21:20:53 EndTime=2025-02-08T21:37:58 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:20:53 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=20 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=150G,node=1,billing=25
   AllocTRES=cpu=20,mem=150G,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=0-19 Mem=153600 GRES=
   MinCPUsNode=20 MinMemoryNode=150G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/2c/8e4edd3debb4244a8c3f38cc7be063/.command.log
   Power=
   TresPerTask=cpu:10