UCT HPC cluster

JOB DETAILS FOR JOB 70085

captured Sat Feb 8 21:20:32 SAST 2025

MaxRAM=8.7G
MaxVMSize=0G
AveCPUFreq=8K
AveDiskRead=33476781446
AveDiskWrite=1907845753

JobId=70085 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7058 Nice=0 Account=humgen QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:15:19 TimeLimit=2-12:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:05:13 EligibleTime=2025-02-08T21:05:13
   AccrueTime=2025-02-08T21:05:13
   StartTime=2025-02-08T21:05:13 EndTime=2025-02-11T09:05:13 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:05:13 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=100G,node=1,billing=20
   AllocTRES=cpu=10,mem=100G,node=1,billing=20
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=10-19 Mem=102400 GRES=
   MinCPUsNode=13 MinMemoryNode=100G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70085

captured Sat Feb 8 21:21:01 SAST 2025

JobId=70085 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7058 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:15:33 TimeLimit=2-12:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:05:13 EligibleTime=2025-02-08T21:05:13
   AccrueTime=2025-02-08T21:05:13
   StartTime=2025-02-08T21:05:13 EndTime=2025-02-08T21:20:46 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:05:13 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=100G,node=1,billing=20
   AllocTRES=cpu=10,mem=100G,node=1,billing=20
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=10-19 Mem=102400 GRES=
   MinCPUsNode=13 MinMemoryNode=100G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70085

captured Sat Feb 8 21:21:32 SAST 2025

JobId=70085 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7058 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:15:33 TimeLimit=2-12:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:05:13 EligibleTime=2025-02-08T21:05:13
   AccrueTime=2025-02-08T21:05:13
   StartTime=2025-02-08T21:05:13 EndTime=2025-02-08T21:20:46 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:05:13 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=100G,node=1,billing=20
   AllocTRES=cpu=10,mem=100G,node=1,billing=20
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=10-19 Mem=102400 GRES=
   MinCPUsNode=13 MinMemoryNode=100G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70085

captured Sat Feb 8 21:22:02 SAST 2025

JobId=70085 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7058 Nice=0 Account=humgen QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=250:0
   DerivedExitCode=0:0
   RunTime=00:15:33 TimeLimit=2-12:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T21:05:13 EligibleTime=2025-02-08T21:05:13
   AccrueTime=2025-02-08T21:05:13
   StartTime=2025-02-08T21:05:13 EndTime=2025-02-08T21:20:46 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T21:05:13 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc229
   BatchHost=srvrochpc229
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=100G,node=1,billing=20
   AllocTRES=cpu=10,mem=100G,node=1,billing=20
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc229 CPU_IDs=10-19 Mem=102400 GRES=
   MinCPUsNode=13 MinMemoryNode=100G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/26/04da680fc483a904ab80e125dabab0/.command.log
   Power=
   TresPerTask=cpu:10