UCT HPC cluster

JOB DETAILS FOR JOB 70029

captured Sat Feb 8 16:54:32 SAST 2025

MaxRAM=52.4G
MaxVMSize=0G
AveCPUFreq=5K
AveDiskRead=961624916253
AveDiskWrite=39264069912

JobId=70029 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7041 Nice=0 Account=humgen QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=12:13:42 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T04:40:50 EligibleTime=2025-02-08T04:40:50
   AccrueTime=2025-02-08T04:40:50
   StartTime=2025-02-08T04:40:50 EndTime=2025-02-09T10:40:50 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T04:40:50 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=0-9 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70029

captured Sat Feb 8 16:55:01 SAST 2025

JobId=70029 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7041 Nice=0 Account=humgen QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=12:14:04 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T04:40:50 EligibleTime=2025-02-08T04:40:50
   AccrueTime=2025-02-08T04:40:50
   StartTime=2025-02-08T04:40:50 EndTime=2025-02-08T16:54:54 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T04:40:50 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=0-9 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70029

captured Sat Feb 8 16:55:32 SAST 2025

JobId=70029 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7041 Nice=0 Account=humgen QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=12:14:04 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T04:40:50 EligibleTime=2025-02-08T04:40:50
   AccrueTime=2025-02-08T04:40:50
   StartTime=2025-02-08T04:40:50 EndTime=2025-02-08T16:54:54 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T04:40:50 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=0-9 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70029

captured Sat Feb 8 16:56:01 SAST 2025

JobId=70029 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7041 Nice=0 Account=humgen QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=12:14:04 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T04:40:50 EligibleTime=2025-02-08T04:40:50
   AccrueTime=2025-02-08T04:40:50
   StartTime=2025-02-08T04:40:50 EndTime=2025-02-08T16:54:54 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T04:40:50 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=0-9 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70029

captured Sat Feb 8 16:56:32 SAST 2025

JobId=70029 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7041 Nice=0 Account=humgen QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=12:14:04 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T04:40:50 EligibleTime=2025-02-08T04:40:50
   AccrueTime=2025-02-08T04:40:50
   StartTime=2025-02-08T04:40:50 EndTime=2025-02-08T16:54:54 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T04:40:50 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=0-9 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   Power=
   TresPerTask=cpu:10

UCT HPC clusterJOB DETAILS FOR JOB 70029

captured Sat Feb 8 16:57:01 SAST 2025

JobId=70029 JobName=nf-deepVariantCaller_(Writing_genotypes_to_{bamName}.g.vcf.gz )
   UserId=eshkev001(733301741) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7041 Nice=0 Account=humgen QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=0 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=12:14:04 TimeLimit=1-06:00:00 TimeMin=N/A
   SubmitTime=2025-02-08T04:40:50 EligibleTime=2025-02-08T04:40:50
   AccrueTime=2025-02-08T04:40:50
   StartTime=2025-02-08T04:40:50 EndTime=2025-02-08T16:54:54 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-02-08T04:40:50 Scheduler=Main
   Partition=sadacc AllocNode:Sid=srvrochpc228:242874
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc228
   BatchHost=srvrochpc228
   NumNodes=1 NumCPUs=10 NumTasks=1 CPUs/Task=10 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=10,mem=50G,node=1,billing=15
   AllocTRES=cpu=10,mem=50G,node=1,billing=15
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc228 CPU_IDs=0-9 Mem=51200 GRES=
   MinCPUsNode=10 MinMemoryNode=50G MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=.command.run
   WorkDir=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693
   StdErr=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   StdIn=/dev/null
   StdOut=/scratch/eshkev001/nfworkdirs/wgst2t/05/cb4f2fd54a8e16ebeca59a446b5693/.command.log
   Power=
   TresPerTask=cpu:10