UCT HPC cluster

JOB DETAILS FOR JOB 52763

captured Thu Nov 21 11:36:01 SAST 2024

MaxRAM=32.5G
MaxVMSize=0G
AveCPUFreq=3.30M
AveDiskRead=7247984637
AveDiskWrite=102254609

JobId=52763 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:03:19 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:32:42 EligibleTime=2024-11-21T11:32:42
   AccrueTime=2024-11-21T11:32:42
   StartTime=2024-11-21T11:32:42 EndTime=2024-11-25T05:32:42 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:32:42 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=15,21,41,47 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates2.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52763

captured Thu Nov 21 11:36:34 SAST 2024

JobId=52763 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=1:0
   DerivedExitCode=0:0
   RunTime=00:03:44 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:32:42 EligibleTime=2024-11-21T11:32:42
   AccrueTime=2024-11-21T11:32:42
   StartTime=2024-11-21T11:32:42 EndTime=2024-11-21T11:36:26 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:32:42 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=15,21,41,47 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates2.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52763

captured Thu Nov 21 11:37:01 SAST 2024

JobId=52763 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=1:0
   DerivedExitCode=0:0
   RunTime=00:03:44 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:32:42 EligibleTime=2024-11-21T11:32:42
   AccrueTime=2024-11-21T11:32:42
   StartTime=2024-11-21T11:32:42 EndTime=2024-11-21T11:36:26 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:32:42 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=15,21,41,47 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates2.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52763

captured Thu Nov 21 11:37:35 SAST 2024

JobId=52763 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=1:0
   DerivedExitCode=0:0
   RunTime=00:03:44 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:32:42 EligibleTime=2024-11-21T11:32:42
   AccrueTime=2024-11-21T11:32:42
   StartTime=2024-11-21T11:32:42 EndTime=2024-11-21T11:36:26 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:32:42 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=15,21,41,47 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates2.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52763

captured Thu Nov 21 11:38:02 SAST 2024

JobId=52763 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=1:0
   DerivedExitCode=0:0
   RunTime=00:03:44 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:32:42 EligibleTime=2024-11-21T11:32:42
   AccrueTime=2024-11-21T11:32:42
   StartTime=2024-11-21T11:32:42 EndTime=2024-11-21T11:36:26 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:32:42 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=15,21,41,47 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates2.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52763.out
   Power=