UCT HPC cluster

JOB DETAILS FOR JOB 52758

captured Thu Nov 21 11:36:01 SAST 2024

MaxRAM=32.7G
MaxVMSize=0G
AveCPUFreq=2.60M
AveDiskRead=13877151198
AveDiskWrite=3556799104

JobId=52758 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:07:23 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:28:38 EligibleTime=2024-11-21T11:28:38
   AccrueTime=2024-11-21T11:28:38
   StartTime=2024-11-21T11:28:38 EndTime=2024-11-25T05:28:38 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:28:38 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc103
   BatchHost=srvrochpc103
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc103 CPU_IDs=10-11,24-25 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52758

captured Thu Nov 21 11:36:34 SAST 2024

JobId=52758 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=1:0
   DerivedExitCode=0:0
   RunTime=00:07:44 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:28:38 EligibleTime=2024-11-21T11:28:38
   AccrueTime=2024-11-21T11:28:38
   StartTime=2024-11-21T11:28:38 EndTime=2024-11-21T11:36:22 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:28:38 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc103
   BatchHost=srvrochpc103
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc103 CPU_IDs=10-11,24-25 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52758

captured Thu Nov 21 11:37:01 SAST 2024

JobId=52758 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=1:0
   DerivedExitCode=0:0
   RunTime=00:07:44 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:28:38 EligibleTime=2024-11-21T11:28:38
   AccrueTime=2024-11-21T11:28:38
   StartTime=2024-11-21T11:28:38 EndTime=2024-11-21T11:36:22 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:28:38 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc103
   BatchHost=srvrochpc103
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc103 CPU_IDs=10-11,24-25 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52758

captured Thu Nov 21 11:37:35 SAST 2024

JobId=52758 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=1:0
   DerivedExitCode=0:0
   RunTime=00:07:44 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:28:38 EligibleTime=2024-11-21T11:28:38
   AccrueTime=2024-11-21T11:28:38
   StartTime=2024-11-21T11:28:38 EndTime=2024-11-21T11:36:22 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:28:38 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc103
   BatchHost=srvrochpc103
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc103 CPU_IDs=10-11,24-25 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52758

captured Thu Nov 21 11:38:02 SAST 2024

JobId=52758 JobName=Marked_duplicates
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7249 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=1:0
   DerivedExitCode=0:0
   RunTime=00:07:44 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-21T11:28:38 EligibleTime=2024-11-21T11:28:38
   AccrueTime=2024-11-21T11:28:38
   StartTime=2024-11-21T11:28:38 EndTime=2024-11-21T11:36:22 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-21T11:28:38 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:988150
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc103
   BatchHost=srvrochpc103
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc103 CPU_IDs=10-11,24-25 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/Alignment/BAM/picard/marked_duplicates.sh
   WorkDir=/scratch/thnthi002/Alignment/BAM/picard
   StdErr=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/Alignment/BAM/picard/slurm-52758.out
   Power=