UCT HPC cluster

JOB DETAILS FOR JOB 52397

captured Wed Nov 20 20:49:01 SAST 2024

MaxRAM=10.8G
MaxVMSize=0G
AveCPUFreq=3.29M
AveDiskRead=9618381015
AveDiskWrite=50271991

JobId=52397 JobName=checking
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:03:46 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-20T20:45:15 EligibleTime=2024-11-20T20:45:15
   AccrueTime=2024-11-20T20:45:15
   StartTime=2024-11-20T20:45:15 EndTime=2024-11-24T14:45:15 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-20T20:45:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:967572
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=29,39-41 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/haplotype_caller/checking.sh
   WorkDir=/scratch/thnthi002/haplotype_caller
   StdErr=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52397

captured Wed Nov 20 20:49:33 SAST 2024

JobId=52397 JobName=checking
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=3:0
   DerivedExitCode=0:0
   RunTime=00:04:08 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-20T20:45:15 EligibleTime=2024-11-20T20:45:15
   AccrueTime=2024-11-20T20:45:15
   StartTime=2024-11-20T20:45:15 EndTime=2024-11-20T20:49:23 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-20T20:45:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:967572
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=29,39-41 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/haplotype_caller/checking.sh
   WorkDir=/scratch/thnthi002/haplotype_caller
   StdErr=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52397

captured Wed Nov 20 20:50:01 SAST 2024

JobId=52397 JobName=checking
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=3:0
   DerivedExitCode=0:0
   RunTime=00:04:08 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-20T20:45:15 EligibleTime=2024-11-20T20:45:15
   AccrueTime=2024-11-20T20:45:15
   StartTime=2024-11-20T20:45:15 EndTime=2024-11-20T20:49:23 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-20T20:45:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:967572
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=29,39-41 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/haplotype_caller/checking.sh
   WorkDir=/scratch/thnthi002/haplotype_caller
   StdErr=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52397

captured Wed Nov 20 20:50:33 SAST 2024

JobId=52397 JobName=checking
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=3:0
   DerivedExitCode=0:0
   RunTime=00:04:08 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-20T20:45:15 EligibleTime=2024-11-20T20:45:15
   AccrueTime=2024-11-20T20:45:15
   StartTime=2024-11-20T20:45:15 EndTime=2024-11-20T20:49:23 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-20T20:45:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:967572
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=29,39-41 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/haplotype_caller/checking.sh
   WorkDir=/scratch/thnthi002/haplotype_caller
   StdErr=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 52397

captured Wed Nov 20 20:51:01 SAST 2024

JobId=52397 JobName=checking
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=FAILED Reason=NonZeroExitCode Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=3:0
   DerivedExitCode=0:0
   RunTime=00:04:08 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-20T20:45:15 EligibleTime=2024-11-20T20:45:15
   AccrueTime=2024-11-20T20:45:15
   StartTime=2024-11-20T20:45:15 EndTime=2024-11-20T20:49:23 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-20T20:45:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:967572
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=29,39-41 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/haplotype_caller/checking.sh
   WorkDir=/scratch/thnthi002/haplotype_caller
   StdErr=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/haplotype_caller/slurm-52397.out
   Power=