UCT HPC cluster

JOB DETAILS FOR JOB 51125

captured Tue Nov 19 10:05:35 SAST 2024

MaxRAM=0.5G
MaxVMSize=0G
AveCPUFreq=2.60M
AveDiskRead=275966101
AveDiskWrite=274727036

JobId=51125 JobName=recompressing
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:00:01 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-19T10:05:34 EligibleTime=2024-11-19T10:05:34
   AccrueTime=2024-11-19T10:05:34
   StartTime=2024-11-19T10:05:34 EndTime=2024-11-23T04:05:34 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-19T10:05:34 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:2403636
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=36-39 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/recommpressed.sh
   WorkDir=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller
   StdErr=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 51125

captured Tue Nov 19 10:06:01 SAST 2024

JobId=51125 JobName=recompressing
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:00:06 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-19T10:05:34 EligibleTime=2024-11-19T10:05:34
   AccrueTime=2024-11-19T10:05:34
   StartTime=2024-11-19T10:05:34 EndTime=2024-11-19T10:05:40 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-19T10:05:34 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:2403636
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=36-39 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/recommpressed.sh
   WorkDir=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller
   StdErr=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 51125

captured Tue Nov 19 10:06:36 SAST 2024

JobId=51125 JobName=recompressing
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:00:06 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-19T10:05:34 EligibleTime=2024-11-19T10:05:34
   AccrueTime=2024-11-19T10:05:34
   StartTime=2024-11-19T10:05:34 EndTime=2024-11-19T10:05:40 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-19T10:05:34 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:2403636
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=36-39 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/recommpressed.sh
   WorkDir=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller
   StdErr=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 51125

captured Tue Nov 19 10:07:01 SAST 2024

JobId=51125 JobName=recompressing
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:00:06 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-19T10:05:34 EligibleTime=2024-11-19T10:05:34
   AccrueTime=2024-11-19T10:05:34
   StartTime=2024-11-19T10:05:34 EndTime=2024-11-19T10:05:40 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-19T10:05:34 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:2403636
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=36-39 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/recommpressed.sh
   WorkDir=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller
   StdErr=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 51125

captured Tue Nov 19 10:07:35 SAST 2024

JobId=51125 JobName=recompressing
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:00:06 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-19T10:05:34 EligibleTime=2024-11-19T10:05:34
   AccrueTime=2024-11-19T10:05:34
   StartTime=2024-11-19T10:05:34 EndTime=2024-11-19T10:05:40 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-19T10:05:34 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:2403636
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=36-39 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/recommpressed.sh
   WorkDir=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller
   StdErr=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   Power=

UCT HPC clusterJOB DETAILS FOR JOB 51125

captured Tue Nov 19 10:08:01 SAST 2024

JobId=51125 JobName=recompressing
   UserId=thnthi002(465176414 Thina Gcobo) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7258 Nice=0 Account=pathology QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:00:06 TimeLimit=3-18:00:00 TimeMin=N/A
   SubmitTime=2024-11-19T10:05:34 EligibleTime=2024-11-19T10:05:34
   AccrueTime=2024-11-19T10:05:34
   StartTime=2024-11-19T10:05:34 EndTime=2024-11-19T10:05:40 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2024-11-19T10:05:34 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:2403636
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc102
   BatchHost=srvrochpc102
   NumNodes=1 NumCPUs=4 NumTasks=4 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=4,mem=32000M,node=1,billing=7
   AllocTRES=cpu=4,mem=32000M,node=1,billing=7
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc102 CPU_IDs=36-39 Mem=32000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/recommpressed.sh
   WorkDir=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller
   StdErr=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   StdIn=/dev/null
   StdOut=/scratch/thnthi002/variant_calling/recompressed_haplotypecaller/slurm-51125.out
   Power=