UCT HPC cluster

JOB DETAILS FOR JOB 300614

captured Tue Oct 7 13:57:01 SAST 2025

MaxRAM=10.5G
MaxVMSize=0G
AveCPUFreq=278K
AveDiskRead=82930842352
AveDiskWrite=52782625191

JobId=300614 JobName=arcasHLA_genotype
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7256 Nice=0 Account=pathology QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:18:38 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-07T13:38:24 EligibleTime=2025-10-07T13:38:24
   AccrueTime=2025-10-07T13:38:24
   StartTime=2025-10-07T13:38:24 EndTime=2025-10-13T13:38:24 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-07T13:38:24 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:820133
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc106
   BatchHost=srvrochpc106
   NumNodes=1 NumCPUs=20 NumTasks=20 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=20,mem=160000M,node=1,billing=35
   AllocTRES=cpu=20,mem=160000M,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc106 CPU_IDs=8-17,31-33,41-47 Mem=160000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk_genotype.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-300614.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-300614.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL

UCT HPC clusterJOB DETAILS FOR JOB 300614

captured Tue Oct 7 13:57:43 SAST 2025

JobId=300614 JobName=arcasHLA_genotype
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7256 Nice=0 Account=pathology QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:19:08 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-07T13:38:24 EligibleTime=2025-10-07T13:38:24
   AccrueTime=2025-10-07T13:38:24
   StartTime=2025-10-07T13:38:24 EndTime=2025-10-07T13:57:32 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-07T13:38:24 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:820133
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc106
   BatchHost=srvrochpc106
   NumNodes=1 NumCPUs=20 NumTasks=20 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=20,mem=160000M,node=1,billing=35
   AllocTRES=cpu=20,mem=160000M,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc106 CPU_IDs=8-17,31-33,41-47 Mem=160000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk_genotype.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-300614.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-300614.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL

UCT HPC clusterJOB DETAILS FOR JOB 300614

captured Tue Oct 7 13:58:02 SAST 2025

JobId=300614 JobName=arcasHLA_genotype
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7256 Nice=0 Account=pathology QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:19:08 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-07T13:38:24 EligibleTime=2025-10-07T13:38:24
   AccrueTime=2025-10-07T13:38:24
   StartTime=2025-10-07T13:38:24 EndTime=2025-10-07T13:57:32 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-07T13:38:24 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:820133
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc106
   BatchHost=srvrochpc106
   NumNodes=1 NumCPUs=20 NumTasks=20 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=20,mem=160000M,node=1,billing=35
   AllocTRES=cpu=20,mem=160000M,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc106 CPU_IDs=8-17,31-33,41-47 Mem=160000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk_genotype.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-300614.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-300614.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL

UCT HPC clusterJOB DETAILS FOR JOB 300614

captured Tue Oct 7 13:58:45 SAST 2025

JobId=300614 JobName=arcasHLA_genotype
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7256 Nice=0 Account=pathology QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:19:08 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-07T13:38:24 EligibleTime=2025-10-07T13:38:24
   AccrueTime=2025-10-07T13:38:24
   StartTime=2025-10-07T13:38:24 EndTime=2025-10-07T13:57:32 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-07T13:38:24 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:820133
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc106
   BatchHost=srvrochpc106
   NumNodes=1 NumCPUs=20 NumTasks=20 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=20,mem=160000M,node=1,billing=35
   AllocTRES=cpu=20,mem=160000M,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc106 CPU_IDs=8-17,31-33,41-47 Mem=160000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk_genotype.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-300614.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-300614.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL

UCT HPC clusterJOB DETAILS FOR JOB 300614

captured Tue Oct 7 13:59:01 SAST 2025

JobId=300614 JobName=arcasHLA_genotype
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7256 Nice=0 Account=pathology QOS=normal
   JobState=COMPLETED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:19:08 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-07T13:38:24 EligibleTime=2025-10-07T13:38:24
   AccrueTime=2025-10-07T13:38:24
   StartTime=2025-10-07T13:38:24 EndTime=2025-10-07T13:57:32 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-07T13:38:24 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:820133
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc106
   BatchHost=srvrochpc106
   NumNodes=1 NumCPUs=20 NumTasks=20 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=20,mem=160000M,node=1,billing=35
   AllocTRES=cpu=20,mem=160000M,node=1,billing=35
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc106 CPU_IDs=8-17,31-33,41-47 Mem=160000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk_genotype.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-300614.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-300614.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL