UCT HPC cluster

JOB DETAILS FOR JOB 299737

captured Mon Oct 6 09:55:49 SAST 2025

MaxRAM=0G
MaxVMSize=0G
AveCPUFreq=3.15M
AveDiskRead=24353821
AveDiskWrite=542254

JobId=299737 JobName=arcasHLA_pseudobulk_bam
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7274 Nice=0 Account=pathology QOS=normal
   JobState=RUNNING Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:0
   DerivedExitCode=0:0
   RunTime=00:13:34 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-06T09:42:15 EligibleTime=2025-10-06T09:42:15
   AccrueTime=2025-10-06T09:42:15
   StartTime=2025-10-06T09:42:15 EndTime=2025-10-12T09:42:15 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-06T09:42:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:3287330
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc111
   BatchHost=srvrochpc111
   NumNodes=1 NumCPUs=40 NumTasks=40 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=40,mem=312.50G,node=1,billing=71
   AllocTRES=cpu=40,mem=312.50G,node=1,billing=71
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc111 CPU_IDs=0-19,24-43 Mem=320000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-299737.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-299737.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL

UCT HPC clusterJOB DETAILS FOR JOB 299737

captured Mon Oct 6 09:56:31 SAST 2025

JobId=299737 JobName=arcasHLA_pseudobulk_bam
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7274 Nice=0 Account=pathology QOS=normal
   JobState=CANCELLED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:15
   DerivedExitCode=0:0
   RunTime=00:14:12 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-06T09:42:15 EligibleTime=2025-10-06T09:42:15
   AccrueTime=2025-10-06T09:42:15
   StartTime=2025-10-06T09:42:15 EndTime=2025-10-06T09:56:27 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-06T09:42:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:3287330
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc111
   BatchHost=srvrochpc111
   NumNodes=1 NumCPUs=40 NumTasks=40 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=40,mem=312.50G,node=1,billing=71
   AllocTRES=cpu=40,mem=312.50G,node=1,billing=71
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc111 CPU_IDs=0-19,24-43 Mem=320000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-299737.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-299737.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL

UCT HPC clusterJOB DETAILS FOR JOB 299737

captured Mon Oct 6 09:57:01 SAST 2025

JobId=299737 JobName=arcasHLA_pseudobulk_bam
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7274 Nice=0 Account=pathology QOS=normal
   JobState=CANCELLED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:15
   DerivedExitCode=0:0
   RunTime=00:14:12 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-06T09:42:15 EligibleTime=2025-10-06T09:42:15
   AccrueTime=2025-10-06T09:42:15
   StartTime=2025-10-06T09:42:15 EndTime=2025-10-06T09:56:27 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-06T09:42:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:3287330
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc111
   BatchHost=srvrochpc111
   NumNodes=1 NumCPUs=40 NumTasks=40 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=40,mem=312.50G,node=1,billing=71
   AllocTRES=cpu=40,mem=312.50G,node=1,billing=71
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc111 CPU_IDs=0-19,24-43 Mem=320000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-299737.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-299737.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL

UCT HPC clusterJOB DETAILS FOR JOB 299737

captured Mon Oct 6 09:57:46 SAST 2025

JobId=299737 JobName=arcasHLA_pseudobulk_bam
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7274 Nice=0 Account=pathology QOS=normal
   JobState=CANCELLED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:15
   DerivedExitCode=0:0
   RunTime=00:14:12 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-06T09:42:15 EligibleTime=2025-10-06T09:42:15
   AccrueTime=2025-10-06T09:42:15
   StartTime=2025-10-06T09:42:15 EndTime=2025-10-06T09:56:27 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-06T09:42:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:3287330
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc111
   BatchHost=srvrochpc111
   NumNodes=1 NumCPUs=40 NumTasks=40 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=40,mem=312.50G,node=1,billing=71
   AllocTRES=cpu=40,mem=312.50G,node=1,billing=71
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc111 CPU_IDs=0-19,24-43 Mem=320000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-299737.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-299737.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL

UCT HPC clusterJOB DETAILS FOR JOB 299737

captured Mon Oct 6 09:58:01 SAST 2025

JobId=299737 JobName=arcasHLA_pseudobulk_bam
   UserId=lnymon001(1221951624 Monika Looney) GroupId=eresearch_hpc_users(1221947160) MCS_label=N/A
   Priority=7274 Nice=0 Account=pathology QOS=normal
   JobState=CANCELLED Reason=None Dependency=(null)
   Requeue=1 Restarts=0 BatchFlag=1 Reboot=0 ExitCode=0:15
   DerivedExitCode=0:0
   RunTime=00:14:12 TimeLimit=6-00:00:00 TimeMin=N/A
   SubmitTime=2025-10-06T09:42:15 EligibleTime=2025-10-06T09:42:15
   AccrueTime=2025-10-06T09:42:15
   StartTime=2025-10-06T09:42:15 EndTime=2025-10-06T09:56:27 Deadline=N/A
   SuspendTime=None SecsPreSuspend=0 LastSchedEval=2025-10-06T09:42:15 Scheduler=Main
   Partition=ada AllocNode:Sid=srvrochpc001.uct.ac.za:3287330
   ReqNodeList=(null) ExcNodeList=(null)
   NodeList=srvrochpc111
   BatchHost=srvrochpc111
   NumNodes=1 NumCPUs=40 NumTasks=40 CPUs/Task=1 ReqB:S:C:T=0:0:*:*
   ReqTRES=cpu=40,mem=312.50G,node=1,billing=71
   AllocTRES=cpu=40,mem=312.50G,node=1,billing=71
   Socks/Node=* NtasksPerN:B:S:C=0:0:*:* CoreSpec=*
   JOB_GRES=(null)
     Nodes=srvrochpc111 CPU_IDs=0-19,24-43 Mem=320000 GRES=
   MinCPUsNode=1 MinMemoryCPU=8000M MinTmpDiskNode=0
   Features=(null) DelayBoot=00:00:00
   OverSubscribe=OK Contiguous=0 Licenses=(null) Network=(null)
   Command=/scratch/lnymon001/arcashla/arcashla_extract_pseudobulk.sh
   WorkDir=/scratch/lnymon001/arcashla
   StdErr=/scratch/lnymon001/arcashla/slurm-299737.out
   StdIn=/dev/null
   StdOut=/scratch/lnymon001/arcashla/slurm-299737.out
   Power=
   MailUser=lnymon001@myuct.ac.za MailType=BEGIN,END,FAIL